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International Journal of Scientific and Engineering Research
ISSN Online 2229-5518
ISSN Print: 2229-5518 7    
Website: http://www.ijser.org
scirp IJSER >> Volume 2, Issue 7, July 2011 Edition
Biological Sequence Matching Using Fuzzy Logic
Full Text(PDF, 3000)  PP.  
Author(s)
Nivit Gill, Shailendra Singh
KEYWORDS
Biological sequences, Dynamic programming, Fuzzy logic, Fuzzy matching score, Fuzzy parameters, Global alignment, Multiple sequence alignment
ABSTRACT
Sequence alignment is the most basic and essential module of computational bio-informatics. In this paper, we propose a multiple sequence alignment algorithm that employs fuzzy logic to measure the similarity of sequences based on fuzzy parameters. To guarantee the optimal alignment of the sequences, dynamic programming is used to align the sequences. The algorithm is tested on few sets of real biological sequences taken from NCBI bank and its performance is evaluated using SinicView tool.
References
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